Complete genome sequence of DSM 30083T, the type strain (U5/41T) of Escherichia coli, and a proposal for delineating subspecies in microbial taxonomy

Although Escherichia coli is the most widely studied bacterial model organism and often considered to be the model bacterium per se, its type strain was until now forgotten from microbial genomics. As a part of the G enomic E ncyclopedia of B acteria and A rchaea project, we here describe the features of E. coli DSM 30083(T) together with its genome sequence and annotation as well as novel aspects of its phenotype. The 5,038,133 bp containing genome sequence includes 4,762 protein-coding genes and 175 RNA genes as well as a single plasmid. Affiliation of a set of 250 genome-sequenced E. coli strains, Shigella and outgroup strains to the type strain of E. coli was investigated using digital…

• UD
  U.S. Department of Energy

  Awards: -AC02-05CH11231, AC05-00OR22725, DE-AC02-06NA25396, 05CH11231, AC02-05CH11231, DE-AC02, DE-AC02-05CH11231, DE-AC05, AC52-07NA27344, 00OR22725, DE-AC02-
• B
  Battelle

  Awards: DE-AC05, DE-AC52-07NA27344, DE-AC05-00OR22725
• OO
  Office of Science

  Awards: DE-AC05-00OR22725, AC02-05CH11231, -AC02-05CH11231, DE-AC02, DE-AC52-07NA27344, AC05-00OR22725
• BA
  Biological and Environmental Research

  Awards: 05CH11231, DE-AC05-00OR22725, DE-AC52-07NA27344, 00OR22725, DE-AC02-05CH11231, AC02-05CH11231
• LL
  Lawrence Livermore National Laboratory

  Awards: DE-AC52-07NA27344, DE-AC05-00OR22725, DE-AC02-05CH11231, AC52-07NA27344
• OR
  Oak Ridge National Laboratory

  Awards: DE-AC52-07NA27344, AC05-00OR22725, DE-AC02-05CH11231
• LB
  Lawrence Berkeley National Laboratory

  Awards: DE-AC02-05CH11231, DE-AC05-00OR22725, 05CH11231, AC02-05CH11231, DE-AC52-07NA27344
• LA
  Los Alamos National Laboratory

  Awards: DE-AC05-00OR22725, DE-AC52-07NA27344, DE-AC02-05CH11231